Boron-deficiency-responsive microRNAs and their targets in Citrus sinensis leaves
Identifieur interne : 000763 ( Main/Exploration ); précédent : 000762; suivant : 000764Boron-deficiency-responsive microRNAs and their targets in Citrus sinensis leaves
Auteurs : Yi-Bin Lu [République populaire de Chine] ; Yi-Ping Qi [République populaire de Chine] ; Lin-Tong Yang [République populaire de Chine] ; Peng Guo [République populaire de Chine] ; Yan Li [République populaire de Chine] ; Li-Song Chen [République populaire de Chine]Source :
- BMC Plant Biology [ 1471-2229 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- chemical , deficiency : Boron.
- genetics : Citrus sinensis, MicroRNAs, Plant Leaves, RNA, Plant.
- metabolism : Citrus sinensis, MicroRNAs, Plant Leaves, RNA, Plant.
Abstract
MicroRNAs play important roles in the adaptive responses of plants to nutrient deficiencies. Most research, however, has focused on nitrogen (N), phosphorus (P), sulfur (S), copper (Cu) and iron (Fe) deficiencies, limited data are available on the differential expression of miRNAs and their target genes in response to deficiencies of other nutrient elements. In this study, we identified the known and novel miRNAs as well as the boron (B)-deficiency-responsive miRNAs from citrus leaves in order to obtain the potential miRNAs related to the tolerance of citrus to B-deficiency.
Seedlings of ‘Xuegan’ [
Ninety one (83 known and 8 novel) up- and 81 (75 known and 6 novel) down-regulated miRNAs were isolated from B-deficient leaves. The great alteration of
Our study reveals some novel responses of citrus to B-deficiency, which increase our understanding of the adaptive mechanisms of citrus to B-deficiency at the miRNA (post-transcriptional) level.
The online version of this article (doi:10.1186/s12870-015-0642-y) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12870-015-0642-y
PubMed: 26538180
PubMed Central: 4634795
Affiliations:
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type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff4">The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff5">Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry 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of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><affiliation wicri:level="3"><nlm:aff id="Aff3">Institute of Materia Medica, Fujian Academy of Medical Sciences, Fuzhou, 350001 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Materia Medica, Fujian Academy of Medical Sciences, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><affiliation wicri:level="3"><nlm:aff id="Aff1">College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><affiliation wicri:level="3"><nlm:aff id="Aff1">College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name><affiliation wicri:level="3"><nlm:aff id="Aff1">College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author><author><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><affiliation wicri:level="3"><nlm:aff id="Aff1">College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff4">The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff5">Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002 China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou</wicri:regionArea><placeName><settlement type="city">Fuzhou</settlement><region type="province">Fujian</region></placeName></affiliation></author></analytic><series><title level="j">BMC Plant Biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Boron (deficiency)</term><term>Citrus sinensis (genetics)</term><term>Citrus sinensis (metabolism)</term><term>MicroRNAs (genetics)</term><term>MicroRNAs (metabolism)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (metabolism)</term><term>RNA, Plant (genetics)</term><term>RNA, Plant (metabolism)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="deficiency" xml:lang="en"><term>Boron</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Citrus sinensis</term><term>MicroRNAs</term><term>Plant Leaves</term><term>RNA, Plant</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Citrus sinensis</term><term>MicroRNAs</term><term>Plant Leaves</term><term>RNA, Plant</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>MicroRNAs play important roles in the adaptive responses of plants to nutrient deficiencies. Most research, however, has focused on nitrogen (N), phosphorus (P), sulfur (S), copper (Cu) and iron (Fe) deficiencies, limited data are available on the differential expression of miRNAs and their target genes in response to deficiencies of other nutrient elements. In this study, we identified the known and novel miRNAs as well as the boron (B)-deficiency-responsive miRNAs from citrus leaves in order to obtain the potential miRNAs related to the tolerance of citrus to B-deficiency.</p></sec><sec><title>Methods</title><p>Seedlings of ‘Xuegan’ [<italic>Citrus sinensis</italic> (L.) Osbeck] were supplied every other day with B-deficient (0 μM H<sub>3</sub>BO<sub>3</sub>) or -sufficient (10 μM H<sub>3</sub>BO<sub>3</sub>) nutrient solution for 15 weeks. Thereafter, we sequenced two small RNA libraries from B-deficient and -sufficient (control) citrus leaves, respectively, using Illumina sequencing.</p></sec><sec><title>Results</title><p>Ninety one (83 known and 8 novel) up- and 81 (75 known and 6 novel) down-regulated miRNAs were isolated from B-deficient leaves. The great alteration of <italic>miRNA</italic> expression might contribute to the tolerance of citrus to B-deficiency. The adaptive responses of miRNAs to B-deficiency might related to several aspects: (a) attenuation of plant growth and development by repressing auxin signaling due to decreased <italic>TIR1</italic> level and ARF-mediated gene expression by altering the expression of <italic>miR393</italic>, <italic>miR160</italic> and <italic>miR3946</italic>; (b) maintaining leaf phenotype and enhancing the stress tolerance by up-regulating <italic>NACs</italic> targeted by <italic>miR159</italic>, <italic>miR782</italic>, <italic>miR3946</italic> and <italic>miR7539</italic>; (c) activation of the stress responses and antioxidant system through down-regulating the expression of <italic>miR164</italic>, <italic>miR6260</italic>, <italic>miR5929</italic>, <italic>miR6214</italic>, <italic>miR3946</italic> and <italic>miR3446</italic>; (d) decreasing the expression of <italic>major facilitator superfamily protein genes</italic> targeted by miR5037, thus lowering B export from plants. Also, B-deficiency-induced down-regulation of <italic>miR408</italic> might play a role in plant tolerance to B-deficiency by regulating Cu homeostasis and enhancing superoxide dismutase activity.</p></sec><sec><title>Conclusions</title><p>Our study reveals some novel responses of citrus to B-deficiency, which increase our understanding of the adaptive mechanisms of citrus to B-deficiency at the miRNA (post-transcriptional) level.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12870-015-0642-y) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Cakmak, I" uniqKey="Cakmak I">I Cakmak</name></author><author><name sortKey="Romheld, V" uniqKey="Romheld V">V Römheld</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dell, B" uniqKey="Dell B">B 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sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><name sortKey="Chen, Li Song" sort="Chen, Li Song" uniqKey="Chen L" first="Li-Song" last="Chen">Li-Song Chen</name><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><name sortKey="Guo, Peng" sort="Guo, Peng" uniqKey="Guo P" first="Peng" last="Guo">Peng Guo</name><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name><name sortKey="Lu, Yi Bin" sort="Lu, Yi Bin" uniqKey="Lu Y" first="Yi-Bin" last="Lu">Yi-Bin Lu</name><name sortKey="Qi, Yi Ping" sort="Qi, Yi Ping" uniqKey="Qi Y" first="Yi-Ping" last="Qi">Yi-Ping Qi</name><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name><name sortKey="Yang, Lin Tong" sort="Yang, Lin Tong" uniqKey="Yang L" first="Lin-Tong" last="Yang">Lin-Tong Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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